My current Freedom of Information (FOI) Requests

Typed and scraped to Arcturus

It is simple to make FOI requests with the MySociety tool/site WhatDoTheyKnow? I have so far made 4 request and comment briefly on each. I will comment on the first later

Your 4 Freedom of Information requests

 

PMR: This is to obtain Cambridge’saccount of the FACTS in the British Library’s DRM technology and policies.

Digital Rights Management and regulations for material supplied by the British Library To the University FOI officer and University Library (UL) I am requesting information about Digital Rights Management and regulations imposed by (a)… Awaiting response.
Request sent to University of Cambridge by Peter Murray-Rust on 8 May 2010.

PMR: This is to obtain the rules on whether I can have to show my face when voting and if not how I can follow up with the local registering or presiding officer

Regulations applying to voters (do I have to show my face?) I am writing to ask whether a voter must show their face to the presiding officer during the voting process. I have on several occasions tried to v… Awaiting response.
Request sent to Electoral Commission by Peter Murray-Rust on 8 May 2010.

PMR: This is because I do not believe the PDF sent to WDTK by the British Library is fully accessible and I wish to know the policies and practices adopted by the BL.

Does correspondence from the BL meet accessibility guidelines In my last mail I omitted my address: Peter Murray-Rust Reader in Molecular Informatics Unilever Centre, Dep. Of Chemistry University of Cambridg… Awaiting response.
Follow up sent to The British Library by Peter Murray-Rust on 8 May 2010.

PMR: This is because the BL can charge for material that is Openly available on publishers web sites and I wished their policy and logic to be made public.

Open Access Scholarly Publications I will be out of the office until 16th November, although i will be accessing email on an intermittent basis. If you require assistance with FOI or… Successful.
All information sent by The British Library to Peter Murray-Rust on 10 November 2009.

Posted in Uncategorized | Leave a comment

How to get Information from the British Library under FOI

Dictated and scraped in to Arcturus

This post will illustrate how the wonderful website whatdotheyknow.com can be used to liberate information from public bodies by invoking the freedom of information act (FOI). If an individual tries to find information from a body under the act thing you to do quite a lot of work beforehand in finding out what the rules are, who had to write to, and what they can expect. Moreover the reply will normally be directed to them and it will not be easy to share it with the general public for fear of breaching confidentiality or copyright whether real or imagined.

Whatdotheyknow.com makes it extremely easy to submit a request to the correct person or organisation and also to publish the whole process to the world thus making it clear what the substance of the reply is at reducing the need for anybody to ask the same question independently. Here is a question that I submitted to the British library asking about their policy on charging for open access materials, especially articles in scholarly publications. A naive reader might assume that if you can get information on the web for three and the British library it would not charge you for it but that is not how the British library works. Peter Suber, the great open access champion and chronicler, admitted that he could not understand in full the logic of that the old policy on charging for open access. If you want to see if you can do better then my FO I request has revealed their reply.

You can follow through my steps. If you go to the site you can search for “British library” and find that there have been 7 requests:

http://www.whatdotheyknow.com/body/the_british_library

This is a useful tutorial on FOI and what do they know.com. The organisation to which the request has been made must reply within 20 working days, and the BL has acted perfectly properly in meeting the deadlines in all these cases. The organisation can give information, can ask for an extension of the deadline, can assert that it does not hold the information, or can make a case that it would be too expensive or too complicated to provide information. Whatdotheyknow.com starts a clock ticking when the request is made which alerts the requester and the whole of the world when the response is overdue.

You can see the history of my request under

http://www.whatdotheyknow.com/request/open_access_scholarly_publicatio#incoming-54783

I shall copy small amounts:

PMR: I believe that when the British Library makes Open Access
publications available to its readers it applies charges even
though the original material is available on the Web without
charge. I also understand that it applies copyright restrictions
forbidding re-use even when the original source explicitly permits
re-use through CC-BY and similar licences

Please can you describe precisely the charging policy, access
policy , and re-use policy for Open Access documents held or
distributed by the BL. If the policy is less Open than the original
source please explain the rationale and what happens to any charges
levied on the reader.

And the substantive reply (which of course is in PDF and intractable and beyond the ability of WDTK to turn into HTML). I have done my best:

For readers unable to visit the reading rooms, the Library also operates a range of remote services. The key public irnetqeurifraecse r feogri tsthrea stiuopnp alny do fp caoypmieenst o fo fa rrteilcelve ainst B cLh aDirrgeecst ,a an dw eofbf-ebras stehde cseornvviecnei tehnacte of an aggregated service.

This is what happens from cut and paste from my default PDF reader embedded in Firefox. I am guessing that this is not an accessible document (i.e. could not be read to an unsighted human or machine without paying money to Adobe). Again I would be grateful for librarians or anyone else to give better information. Dictation gives:

For readers unable to visit the reading rooms, the Library also operates a range of remote services. The key public interface for the supply of copies of article [sic] is BL Direct, a web- based service that requires registration and payment of relevant charges and offers the convenience of an aggregated service.

I shall not dictate the rest of the letter, and urge those interested in why the BL charges for open access material to read the document. I have marked as they reply as successful, not because I agree with the content but because the content is sufficiently substantial is that I can then take this up with the others. I shall however question their policy on accessibility and do this for the freedom of information act.

 

Posted in Uncategorized | Leave a comment

Campaign to liberate Information from The British Library

Dictated to Arcturus

This is a first step in a campaign to find out the British library is current policy to digital rights management in inter library loans and other facilities and then turn lobby opinion including government to change it. I believe that the current policy is at odds with the stated policy of Dame Lynne Brindley and that it is seriously counterproductive to scholarship in this country.

I had hoped that I would get support from academic research librarians both proactively and in my request yesterday it for information about into library loans. I asked for precise information on the procedures involved with into library loans from the British library. Send some of my current information may have come from non public sources I wanted a public correct statement from librarians. I know this blog is read by many librarians and I know that it was the morning after the election but I’m disappointed that no one has contacted me with this information. I am therefore going to pursue it by more formal means. Of course if any librarian reads this narrow I would be delighted for the information.

However there is a more serious failing in the university librarian system. I believe the policy about which I am concerned has been introduced in the last year or so. It is so counterproductive to scholarship that I believe it to be the duty of everyone in the library system firstly two and that the academic community to it and secondly it to campaign actively against it. However as far as I can see the library committee is completely and politicised and subservient two authorities such as the British library. I am therefore going to take measures to which there is a required legal reply.

I am going to ascertain what these procedures are by using the freedom of information act. The University of Cambridge is required to disclose information under the freedom of information act and I shall make an inquiry to ascertain the current procedures and rules for inter library loans. I shall use whatdotheyknow.com to send a request to the University of Cambridge. This request will be public the university, by law, there is required to respond within 20 days. They reply will be public and I hope it will be informative. From this I hope to gather both what the British library is policy and regulations are and what additional regulations (or possibly removal!) Are imposed by Cambridge.

The next phase will depend on the reply. If I have been misinformed about the utterly bizarre and counterproductive regulations then everyone will be happy. If however the regulations are what I believe them to be the and I shall pursue them with our newly elected member of parliament, Julian Huppert. This is of course the appropriate way to do it regardless of who the MP is, but there is the additional greater advantage that Julian is a research scientist and has worked in our group. I believe that he will have the same passionate desire to resolve this issue in favour of scientists as I do and previous champions such as Ian Gibson.

I shall start educating our readers of this blog, if they do not know already, how whatdotheyknow.com and writetothem.com work. The first example that will be a request I sent last year to the British library so that I know that the System Works.

Academic librarians to the need to campaign for what is necessary rather than what appears to be the rules.

Posted in Uncategorized | 2 Comments

Biomed Central and Microsoft honour Open Data

Typed and scraped into Arcturus

I am delighted to be able to help BMC with their Open Data award, co-sponsored by Microsoft (see below which I quote in full).

Open data is on everyone’s lips today but go back only 3 and a half years and the term was hardly known (http://en.wikipedia.org/w/index.php?title=Open_science_data&oldid=84679322). I felt it was needed and Opened the Wikipedia article to stimulate and concentrate contributions. Now we have Open Data promoted by governments which must surely be a mark of its importance.

When I started in this area I thought it would be trivial – data were facts, facts were non-copyrightable – so all data should be Open and it was only a gentle ignorance of the problem that prevented all data being shared. Maybe it pays to be naive because it has been a hard road. The involvement of the Open Knowledge Foundation and Science Commons has bee n c ritical and this has coincided – about 2 years ago with a sudden flurry of realization among funders that data was critical to the support of science. So it is a idea which has visited many people and organizations simultaneously. People do not have ideas; ideas visit them and some people are more fortunate than others.

So here is the full glory of the BMC/Microsoft awards. Much credit to both and I really look forward to it; and beyond that to the day when the major data resources of the web include Linked Open Scientific Data. (http://blogs.openaccesscentral.com/blogs/bmcblog/entry/introducing_the_open_data_award )

BioMed Central Blog

Friday May 07, 2010

Introducing the Open Data Award

In recognition of the fact that science publishing now goes beyond the traditional journal article, we have teamed up with Microsoft Research and Panton Principles to introduce the Open Data Award as part of our 4th Annual Research Awards. Data sharing, its preservation and re-use, is an increasingly important part of the research and publication process. But there are many challenges associated with openly sharing scientific data, particularly when sharing goes against cultural or community norms. 

The Open Data Award celebrates researchers who have published in any of our 207 journals during 2009 and have demonstrated leadership in the sharing, standardization, publication, or re-use of biomedical research data.

We are honoured that Peter Murray-Rust, Cameron Neylon begin_of_the_skype_highlighting     end_of_the_skype_highlighting, Rufus Pollock and John Wilbanks of Panton Principles have agreed to judge the awards along with our in-house Editor, Iain Hrynaszkiewicz, Managing Editor of our special medical journals.

The shortlist will be announced in the coming weeks and the winner will be revealed at the awards ceremony on Thursday, 10 June in London.

Posted in Uncategorized | 2 Comments

Update: CML, Chem4Word, CheTA, OREChem, Lensfield

 

dictated to Arcturus

Our group has been making tremendous progress over the last few months and I will be posting many posts which detail what we have done and where the resources are. As almost everything that we do is open. Here are some of the things that I expect to be talking about.

  • Chemical Markup Language (CML). The work with chem4word has not only been tremendously valuable in developing the architecture and functionality of the system but also has given us great confidence in CML. We now have a schema (cmllite) which covers all the main features of molecules and is extensible. This has been widely tested on our own software (JUMBO, OPSIN, OSCAR,) and also for importing sources such as Pubchem. This means that we can now have access to a very large number of molecules in CML. To give information on CML we shall be devoting a special blog to it. We shall also revitalise the CML website and Home page.
  • Chem4word. Again there has been tremendous progress here Joe Townsend is now running this is a global activity. We hope to have a special blog devoted to chem4word and mechanisms for keeping the community in touch.
  • CheTA, OSCAR and OPSIN. CheTA is our JISC funded project with NACTEM and we have been making very good progress. Oscar is now being refactored with a project sponsored by OMII. OPSIN is the leading open source name2structure converter and achieves 97% correctness on do IUPAC names in Pubchem. We are now using these to automate our reading of the chemical literature.
  • Lensfield and OREchem. Orechem is a collaborative project with Cornell, Penn State, Indiana University, Southampton and funded by Microsoft. An important sub project is to be able to compute the world’s chemical literature automatically. We are building a pipeline based on RDF which will automate the conversion of crystal structures into CML, high throughput computation with quantum mechanical programs, conversion to RDF and publication with a SPARQL endpoint. Lensfield is Jim Downing’s supervision for a new generation of automatic scientific computation. It’s based on functional programming and is derived from the ideas of the make utility.
  • AMY. Our “Star Trek” vision of an artificially-intelligent chemistry laboratory. It’s not science fiction. It will soon be science fact. Also JISC funded.

More in detail on all of these.

Posted in Uncategorized | 3 Comments

Needed: Accurate information on British Library policy on copyright and use of Interlibrary Loans

 

Typed and pasted to Arcturus

[As I said the election was a holiday from the daily basis of trying to create a fair society at grass roots. We are now back to the process of trying to pull our institutions into the 21st century by using web democracy.]

I have discovered a new policy at the British Library which is so bizarre that it comes straight out of Alice Through The Looking Glass. Before I address it in detail I repost quotes made by Dame Lynne Brindley of the BL about a year ago (see this blog).

British Library document on copyright

Saturday, May 9th, 2009

British Library urges new approaches to copyright

Thursday, May 7th, 2009

I’ll quote from Dame Lynne:

Dame Lynne added: “There is a supreme irony that just as technology is allowing greater access to books and other creative works than ever before for education and research, new restrictions threaten to lock away digital content in a way we would never countenance for printed material. Let’s not wake up in five years” time and realise we have unwittingly lost a fundamental building block for innovation, education and research in the UK.” …

My current example will show that the BL is actively moving in precisely the opposite direction by investing in the most bizarre Digital Rights Management (DRM) I have ever seen.

It concerns the copyright and usage constraints on Interlibrary loans (many out of copyright). Before trying to bring the full power of Looking Glass satire on it I’d like to get my facts straight (the example I have got comes through a university library and I believe it has simply transmitted the BL’s conditions. I intend to transmit an FOI to the BL but currently whatdotheyknow.com is having a rest. So please could librarians or research scientists use the comment box to answer:

  • When the BL provides an interlibrary loan in electronic form what constraints on use are imposed.
  • Has this policy changed in the last year (i.e. since Dame Lynne’s ironic speech)

Please copy precisely the BL’s constraints (unless you are forbidden by the BL to do so).

I really need good information on this. The BL’s responses are often masterly Sir Humphreydoms that say nothing, so I need to have very carefully numbered questions and perhaps several FOI requests. If anyone has information on the motivation for the policy I’d be grateful.

And I’d be DELIGHTED to get a reply from the British Library (or humans in it) itself.

Posted in Uncategorized | 1 Comment

The General Election has delivered Animal Farm

 

Dictated to Arcturus

This is probably the last post and I shall make about the UK general election and probably the last with a picture of a bear. As I predicted I voted for the winner of the election which was “a complete mess” with no indication that the country has the mechanism or will to govern itself. It’s meaningless to use scalar quantities such as a single vote to get information on what is a vector quantity (of the variety of different political messages that one would like to send).

The one clear winner was the bear. The bear got several tweets, see http://topsy.com/trackback?utm_source=pingback&utm_campaign=L2&url=http://wwmm.ch.cam.ac.uk/blogs/murrayrust/%3Fp=2331. The bear is so proud that they are reproduced below. Note “classy”, “a national treasure”. And the posters are “highly influential”, “influential” (3). Here’s the full list:

Tweets about this link

jeromegotangcoInfluential: “Can I vote with my face covered? http://bit.ly/aevZWh

simonhodson99: “Politics of the absurd: Vote bear! http://bit.ly/abdjo5 and http://bit.ly/bTt4Uv

danjaHighly Influential: “Can I vote with my face covered? « petermr’s blog: http://bit.ly/bNmMY5

philbarker: “RT @iandolphin24: . @petermurrayrust has now probably officially graduated to “national treasure” status http://bit.ly/csQsJ5

explodingwalrus: “♺ @glynmoody: Can I vote with my face covered? – http://bit.ly/9CwYZW classy: @petermurrayrust tells us why he votes in a bear-suit #ge2010

iandolphin24Influential: “. @petermurrayrust has now probably officially graduated to “national treasure” status http://bit.ly/csQsJ5

iandolphin24Influential: “http://wwmm.ch.cam.ac.uk/blogs/murrayrust/?p=2331

iandolphin24Influential: “RT @glynmoody: Can I vote with my face covered? – http://bit.ly/9CwYZW classy: @petermurrayrust tells us why he votes in a bear-suit #ge2010

popeyInfluential: “♺ @glynmoody: Can I vote with my face covered? – http://bit.ly/9CwYZW classy: @petermurrayrust tells us why he votes in a bear-suit #ge2010

glynmoodyHighly Influential: “Can I vote with my face covered? – http://bit.ly/9CwYZW classy: @petermurrayrust tells us why he votes in a bear-suit #ge2010

 

This is the first time that the bear has stood in a popularity contest. After all general elections are simply popularity contests. So what is the bears mandate? Should it stand in a human election? Should we form an animal party, similar to the monster raving Looney party? Should the bearer form a coalition government with hangers the monkey from Hartlepool? It is waiting by the phone for the call. What policies does the bear have? Here’s its manifesto.

For one day every year the human party should be replaced by animals. (after all prime minister’s question time is little more than a squabble between animals.) Any child in the country should be allowed to propose a change in the law, but they must come dressed as an animal and propose their new law. The child that gives the most buns to the bear gets to make the proposal “.

As a first step to reforming the country the bear at wishes to make contact with all the other animals who voted or even stood as candidates in the election. the bear does not know what the name of the party would be. “The Teddy bear’s party” would be a good name, but of course we must not be exclusionary. This is not “a bears only” party.

Maybe “Animal farm” would be a good name. I don’t think anybody has thought of that before.

Posted in Uncategorized | 1 Comment

I cannot find chemistry e-theses in UK Universities

 

Typed into Arcturus

In a previous post I mentioned that Imperial College had 22 Chemistry theses Openly visible. I thought I’d look to see what other UK universities had. Here’s a simple poll of 19 Russell Group universities (I omitted the LSE as probably not having chemistry). Please correct or enhance any errors.

In our JISC SPECTRa-T project we highlighted the value of chemistry e-theses and what could be extracted from them. Has anyone been listening?

I searched with “theses thesis chemistry imperial” in a popular search engine; analogously for other universities. In some universities it’s almost impossible to answer the simple question “please show me all your chemistry theses”. Sometimes you get all theses in all disciplines. Sometimes you get a mixture of theses and journal articles. I put a ++ where the question is answered simply. A + where you might get something. I’ll comment at the end:

I provide a class-list in the style of Lewis Carroll’s Tangled Tale.

First-class honours:

  • Glasgow
  • Edinburgh
  • Nottingham
  • Imperial

Second-class honours

  • UCL
  • Oxford

Third-class honours

  • Manchester

Only 4 out of 19 were able to answer my simple question. No wonder I cannot find chemistry by searching in Bingle – there isn’t any. I had thought of adapting Nick Day’s Pubcrawler to extract chemistry from theses. Now I know I needn’t bother.

I don’t know whether it’s better in other subjects – I suspect not. The UK university repositories are not capturing etheses in a significant amount or not exposing it or both.

 

Posted in Uncategorized | 2 Comments

Can I vote with my face covered?

Dictated to Arcturus

Why do I vote dressed in a bear suit?

The original reason, which still stands, is that I wish to know how well the electoral process checks against impersonation. I wanted to go with my face covered and see whether I was challenged. The first time I did this I look for something which would cover my face and pulled out my bear suit which I had had specially made about 25 years ago. I used to go to school and entertain the kids in it although it’s a little bit scary. So when I first voted in Cambridge I went down to the polling station in normal dress and asked whether I could vote so that my face could not be seen. The presiding officer said this was permissible So I dressed up in the bear suit and went down to vote. However when I got there she insisted I show my face to check my identity.

On subsequent occasions I have voted in the bear suit and not been challenged. So today I went down in my bear suit. The presiding officer required to me to take my head off so that he could see my face. I have assumed that this is the legal requirement. However I have been alerted to an article from the BBC where election officials have stated that one can vote with one’s face covered. I reproduce the section of the article.

http://news.bbc.co.uk/1/hi/uk_politics/election_2010/8661984.stm

CAN I COVER MY FACE WITH A HOODIE OR SOMETHING ELSE?

Yes. It’s true that polling station staff are on the lookout for people trying to vote twice by impersonating someone else on the register. But Rob Connelly, head of electoral services in Birmingham City Council, says that there’s no requirement for voters to show their face. “If you can’t see someone’s face we can ask them the statutory questions – things like their name and address. We wouldn’t stop someone voting if they’re wearing a hoodie or a burka.”

So it appears that I can vote completely dressed in my bear suit and will continue to do so. To resolve the situation I shall make a formal freedom of information request to Cambridge Council asking them what the legal position is. Unfortunately whatdotheyknow.com is of the air at the moment but as soon as it comes back I shall make this request.

Having established this small tradition and having been recognized at the polling station as having voted in this way before I have looked for a slightly wider significance. It may seem frivolous but it highlights the fact that voting is a special occasion –I call my bear suit my “voting suit”.

I’d be grateful if anyone can give a definitive answer on the question.

NOTE: I have updated the blog with pictures. The bear voted TWICE! Is this illegal? Is it the same bear? Can you tell? Is either of the bears me?

Posted in Uncategorized | 2 Comments

Two cheers for Imperial Spiral: Hamburgers but no Cows

Typed into Arcturus (it’s difficult to use speech with URLs – at least till I know better)

I have spent an exciting and intense day with Henry Rzepa at Imperial College. For those who don’t know Henry has been an energetic and faithful collaborator for nearly 20 years. Henry and I are the co-authors of CML and we are now planning the next phase of CML. I’ll write more about that later.
One thing that Henry mentioned was that Imperial now had a seamless mechanism for the capture of PhD (and presumably MSc) theses into their repository, Spiral. Here’s the list of chemistry theses:
http://eprints.imperial.ac.uk/handle/10044/1/1230/browse?type=title&submit_browse=Title
This gives about 22 theses though I assume it’s updated regularly.
The positive thing is that this is AUTOMATIC and managed  by the registry and  library (see Henry’s comment). Any student that submits a thesis has to do it in electronic form. It’s then processed, possibly revised, and finally submitted again in the same way. The details may be wrong, but the effect is that the College (effectively an independent University) has captured and will continue to capture its chemistry in electronic form.
So why only two cheers? Do readers of the blog really have to ask?
The theses are only available as PDF (or as sometimes called “Acrobat”). This is NOT semantic. Not machine readable. Not text-minable. Not machine-parsable. Not semantic chemistry. Not useful for non-sighted organisms (including machines). The technical term for highlighting its limitations is “hamburger”.
The solution is simple. Provide the thesis in its original born-digital form (“the cow”). And provide the hamburger as well. The humans can read the hamburger, the machines can read the cow and enhance it for humans. The external examiner can ask her machine to read the cow. The machine can offer suggestions as to what is going on in the thesis. Everyone benefits.
The cow does not have to be Word+Chem4Word but it’s the most appropriate way for chemistry. A lot better than PDF alone.
However Imperial does not have the largest number of exposed theses. I wonder which UK university does? Comments welcome.

Posted in Uncategorized | 2 Comments