Yearly Archives: 2008

Posted on January 18, 2008 by pm286

From Peter Suber  More on the NIH OA mandate. Many points but I pick one:   Jocelyn Kaiser, Uncle Sam’s Biomedical Archive Wants Your Papers, Science Magazine, January 18, 2008 (accessible only to subscribers).  Excerpt: If you have a grant … Continue reading →

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XML, Fortran and Mr Fox at NESC

Posted on January 18, 2008 by pm286

Toby White (“Fantastic Mr Fox@) has developed a superb system for enabling FORTRAN programs to emit XML in general and CML specifically. He and colleagues are presenting this at Edinburgh as part of the NESC programme: Integrating Fortran and XML … Continue reading →

Posted in Uncategorized, XML | 1 Comment

Science 2.0

Posted on January 18, 2008 by pm286

Bill Hooker points to an initiative by Scientific American to help collaborative science. Mitch Waldrop on Science 2.0 I’m way behind on this, but anyway: a while back, writer Mitch Waldrop interviewed me and a whole bunch of other people … Continue reading →

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Update, Open Data

Posted on January 18, 2008 by pm286

I have been distracted by the real world (in some cases to good effect). A lot of progress on CML, Wikipedia, chemical language processing, etc. We’ve also had a WordPress upgrade which until it happened has stopped my re-opening the … Continue reading →

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Could Wikia be used for chemistry?

Posted on January 7, 2008 by pm286

This may be miles offbeam, but the following from Peter Suber’s blog caught my eye: Wikia launches Today Jimmy Wales launched an alpha version of Wikia, the search engine to be built openly and wiki-like by users.  From the about … Continue reading →

Posted in semanticWeb | 1 Comment

Community involvement in information capture and extraction

Posted on January 7, 2008 by pm286

There has been a large increase in the number of people and organisations interested in extracting or capturing chemical information from the public domain. This is typified by the ongoing discussions between individuals and organisations – here’s a comment on … Continue reading →

Posted in Uncategorized | 9 Comments

CMLBlog: Sourceforge resources

Posted on January 6, 2008 by pm286

[This is the first of a continuing series of posts destined for the revitalised CMLBlog.] The major developers resource for CML is at sourceforge. This is the traditional page which each project has and has several useful features: There has … Continue reading →

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CML Blog and Update

Posted on January 6, 2008 by pm286

Henry [Rzepa] and I are planning a major facelift for the public face of CML this year.  CML is about 13 years old and has gone through several revisions and relocations, so that information is somewhat scattered. CML is now … Continue reading →

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Open Data in Science

Posted on January 6, 2008 by pm286

I have been invited to write an article for Elsevier’s Serials Review and mentioned it in an earlier post (Open Data: Datument submitted to Elsevier’s Serials Review). I had hoped to post the manuscript immediately afterward but (a) our DSpace … Continue reading →

Posted in data, publishing | Tagged , , , | 13 Comments

Why publishers' technology is obsolete – I

Posted on January 6, 2008 by pm286

I have just finished writing an article for a journal – and I suspect the comments apply to all publishers. To create the Citations (or “references”) they require: CITATIONS Citations should be double-spaced at the end of the text, with … Continue reading →

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