Category Archives: Uncategorized

Comments on the Bourne plot and other EPSRC matters

For whatever reason I get very few comments on this blog (note: I try to be courteous to posters). Comments normally come when I upset people and overstep a line (“turning up the outrage knob”). I don’t generally do this … Continue reading

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EPSRC will eventually have to disclose where the Bourne Incredulity comes from, so please do it now

  I blogged yesterday (/pmr/2011/09/27/the-clarke-bourne-discontinuity/ ) about Paul Clarke’s exposure (http://shear-lunacy.blogspot.com/2011/09/bourne-incredulity.html ) of the EPSRC “decision making” process which appears to use a 2-plot of “quality” vs “importance”. It has now seriously upset me. It needs the spotlight of Openness … Continue reading

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Europe says (scientific) data should be Open. Neelie gets it! Do publishers?

Even in the burgeoning era of Openness it’s great to see the strong stance from many political leaders. Here’s European Commission Vice-President Neelie Kroes Brussels, 22 September 2011 (by Ton Zijlstra) http://epsiplatform.eu/news/news/ec_vp_kroes_on_standardization_and_open_data (I have edited savagely) Speaking at the Open Forum … Continue reading

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The Clarke-Bourne discontinuity

I have (regrettably) only just discovered Paul Clarke’s blog http://shear-lunacy.blogspot.com/2011/09/bourne-incredulity.html . Paul is a synthetic chemist and over this year has challenged science policy funding, especially by the UK’s EPSRC. He has mobilised opinion by collecting signatories to letters to … Continue reading

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Am. Chem. Soc. Skolnik Award 2012 (Henry Rzepa + PMR) and some future thoughts

Henry Rzepa and I have been honoured by the Herman Skolnik award of the Chemical Information Division (CINF) of the American Chemical Society. Details (from Phil McHale) can be found here: http://www.ccl.net/cgi-bin/ccl/message-new?2011+09+26+014 Other than – naturally – feeling pleased for … Continue reading

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Open APIS; My attempts to be Openly Open

Having argued that we need to define Open APIs better I’ll share my experiences as a contributor to Open Knowledge and the challenges that this poses. The first message: Openness takes effort Creating copyrighted works costs no effort. Every keystroke, … Continue reading

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Open APIs: fundamentals and the cases of KEGG and Wikipedia

It is now urgent and vital that we define what is an “Open API”. The phrase is widely used, usually without any indication of what it offers and what – if any restrictions – it imposes. This blog is a … Continue reading

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Why do we continue to use Citations?

I have just got the following mail from Biomed Central about an article we published earlier this year (edited to remove marketing spiel, etc.) Dear Dr Murray-Rust, We thought you might be interested to know how many people have read … Continue reading

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Journal of Cheminformatics special issue: Visions of a Semantic (Molecular) Future

Over the past approximately 3 months I and colleagues have been writing and editing 15 articles for the Journal of Cheminformatics on “Visions of a Semantic (Molecular) Future”. We’ve finally got to the stage where all 15 articles have been … Continue reading

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Open API (or glorious API?)

It is becoming critical that we (?everyone) defines what is meant by “open API” and what it means operationally. This post introduces the problem – the next will suggest some ways forward. Why does this matter? Isn’t “open” an indication … Continue reading

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