Monthly Archives: May 2008

OSCAR's wishList for Nature

Neil Withers of Nature Chemistry has asked the community what they would like to see. Before answering let me applaud Nature on asking, and I see that the blogosphere has already started. Although I campaign for Open Access I’m more … Continue reading

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Noel reviews chemical depiction and SDG

A really useful post from Noel O’Blog about chemical depiction and structure diagram generation (SDG). The chemical structure of compounds in “2D diagrams” is often the most important way of communicating chemical information. There is a gradually growing realisation that … Continue reading

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Chemspider in Nature

Nature has just published an account of Chemspider after interviewing a number of people. (The Nature report, Geoff Brumfiel and I spent considerable time on the phone but it was too late to include my comments in the article so … Continue reading

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Chemistry and CrystalEye – 1

We are discussing with Chemspider how some of the content in CrystalEye can be transferred to Chemspider. What Antony Williams wants is primarily the chemical identity of the substance, expressed as a connection table which can be ingested into CS, … Continue reading

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Clarification on CrystalEye

A long post on CrystalEye by Antony Williams. I comment on points that still need answering: ChemSpider Doesn’t Want a Free Lunch but I Discussed CrystalEye Over Coffee With ACS in New Orleans 06:19 06/05/2008, Antony Williams, a n a … Continue reading

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Chemspider adopts CC-SA licence

I am DELIGHTED to report that Chemspider has adopted a CC-SA licence for its data. I comment below: ChemSpider Adopts Creative Commons Licenses 05:23 06/05/2008, Antony Williams, Over the past year ChemSpider has been challenged over the nature of our … Continue reading

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Some test cases for strongOA/weakOA

I am still – honestly – completely unable to work out what the proposed boundary between strongOA and weakOA (see copious blog posts recently) . I therefore put forward some testcases and ask those who understand it – especially the … Continue reading

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Word, OOXML, ODT

Glyn Moody takes me to task – with some justification – for suggesting that Word/OOXML is a useful format for archival. I should make it clear that I am not religiously opposed to PDF, just to the present incarnation of … Continue reading

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Open metabolomics data

An email which I’m delighted to blog. [from WP: Metabolomics is the “systematic study of the unique chemical fingerprints that specific cellular processes leave behind” – specifically, the study of their small-molecule metabolite profiles.[1] The metabolome represents the collection of … Continue reading

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More clarification from Stevan Harnad

I was just about to start some hacking, but I’ve just got a comment from Stevan that needs reply. [This blog is not the best medium to carry out this discussion but it seems to be providing something useful.] Parts … Continue reading

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