The mystery unfolded – the molecules have been (and can be) found

I think this was delayed by WordPress.)

  1. Jean-Claude and his students cracked a bit of it. Egon has explained it fully and provided the motivation…
  2. Egon Says:
    October 14th, 2006 at 7:55 pm eI have not been able to track down all of the involved blogs, but my final guess would be that these molecules are taken from chemical blogs. The first one is from tenderbutton, the last one already recognized by J-C (thanx for the tip!).(Peter, please don’t say I’m wrong… :)

Yes – they are from the blogs I mentioned – Useful Molecules, Totally Synthetic, Org Prep Daily, and Tenderbutton. The second posting was the very fisrt molecules on those blogts; the third was the most recent molecules (which were also in PubChem so I could copy the images).
The other theme (which some people hinted at) was that the molecules had InChIs. These were concealed in the alt attribute of the img so they weren’t visible to humans. Paul Docherty (Totally Synthetic) droped in for a chat last week and I showed him GoogleInChI. He was interested but worried that the InChI would take up too much space on the page. I first tried hiding it in:


<spane style="display:none">InChI=...</span>
InChI=...

in the first molecules but I was advised that Google doesn't like non-displaying information. So in the second batch I hid it in the alt attribute and this seems to work. (Unfortunately WordPress seems to corrupt handcrafted HTML on images and some of the alts got overwritten, so that is why the earlier molecules didn't all work).
So the main message is that if you put InChIs in alt attributes, Google will index your blogs. This means that we have chemically aware blogs for the first time. If all the blogs do this we shall have a de facto chemical knowledgebase.

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3 Responses to The mystery unfolded – the molecules have been (and can be) found

  1. Egon says:

    If you do want the InChI to show up, but worry about the length of the InChI, you can have a look at CSS too, which has an overflow feature. The nice thing about using the ‘alt’ for images is that it really chemically enriches the images. Note, btw, that there is a discussion ongoing on the InChI mailing list on how to hyphenate InChI’s, which might be useful at some future state.
    Peter, how do you envision people to use this for images of reactions?

  2. pm286 says:

    (1) Reactions. If InChI tackles that we will almost certainly adopt it. Otherwise I would tend to use a simple CMLReact so that the product and reactants could be identified. The following would do:
    InChI=…
    InChI=…
    InChI=…
    InChI=…
    For google it doesn’t even have to be well-formed or namespaced, though that would be good. In principle I would like to see this move towards CMLRSS – but the community will have to go along with that.

  3. pm286 says:

    (2) Sorry – the problem of posting XML in WordPress has defeated me. I will try again later.

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